********************************************************************************
[hawk] Command:  ./crEDC_5g -p ./ParameterFiles/MT2_parm -o
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Output from crEDC version 5g
================================

EDC based on Sullivan et al, 2006 (ITB Bulletin 35:112-116)
  ERRATA: Step 5) Do not absorb sires into their parents.
          This correction avoids double counting in MACE.
  UPDATE: Step 1) extended from single-trait to multi-trait, thus
          Step 2) deleted as it is no longer needed.

*****************************************
*  NOTE: An ANIMAL MODEL was assumed    *
*   Ignoring heritability check         *
*****************************************

Expected Input File Contents:
=============================

  FPED [Data/pedigree]
    animal sire dam

  FOBS [Data/MT_data]
   animal CG1 CG2
OR animal CG1 CG2 wt1 wt2
where CG(i) is the contemporary group and wt(i) the record weight for trait i

Output File Contents:
=====================

  FOUT [Results/MT2_out]
   sire EDC1 EDC2 EDC3 ND1 ND2 ND3
where ND(i) is the number of progeny records for EDC trait i

--------------------------------------------------------------------

      Effect  Heritability  Variance ratio
      Dir_g1     0.2500     15.000 (Sire)
      Dir_g2     0.2727     13.667 (Sire)

         EDC_trait      MACE      Variance   K'              
            (=K'g)  Heritability    ratio    Trait1  Trait2  
? I1)       Health     0.1500*     25.667    1.0000  0.0000
? I2)    Happiness     0.1800*     21.222    0.0000  1.0000
? I3)       Utopia     0.0900*     43.444    1.0000  1.0000

*NOTE: Heritability does not match covariance parameters provided.

==================================================================
Suggested heritabilities calculated from covariances provided
------------------------------------------------------------------
                          Heritability
         EDC_trait   Provided   Calculated from parameters
------------------------------------------------------------------
  I1)       Health     0.1500*     0.2500
  I2)    Happiness     0.1800*     0.2727
  I3)       Utopia     0.0900*     0.0769
==================================================================

R (correlations above diagonal) ...
    Trait1     Trait2  
    6.00000\     -0.144
   -1.00000    8.00000\

G (correlations above diagonal) ...
    Trait1     Trait2  
    2.00000\     -0.816
   -2.00000    3.00000\

No Permanent Environment effects in the model!

CG effects treated as fixed.

V(y) (correlations above diagonal) ...
    Trait1     Trait2  
    8.00000\     -0.320
   -3.00000   11.00000\

First 10 pedigrees with known parent(s)...
1 2  3
2 4 5
3 6 7
4 8 9
5 10 11
6 0 5
12 4 5
13 10 0
14 2 0
15 10 0

15 animals in the pedigree

First 5 performance records...
1 1 1
3 1 1
3 1 2
4 2 0

7 performance records read from Data/MT_data

Structure of contemporary groups
--------------------------------

Trait          Counts             nCG      Mean     Std_Dev       Min        Max 

Trait1         Animals              2     3.5000     0.7071      3.000      4.000
Trait1         Sires                2     2.5000     0.7071      2.000      3.000

Trait2         Animals              2     2.5000     0.7071      2.000      3.000
Trait2         Sires                2     2.0000     1.4142      1.000      3.000

Summary of descriptive means (if EDC > 0)
-----------------------------------------

EDC_trait      Variable             n      Mean     Std_Dev       Min        Max 

Health         EDC                  4     5.2870     4.2892      1.539     10.221
Health         NPROG                4     1.2500     0.5000      1.000      2.000
Health         EDC-NP               4     4.0370     3.9189      0.539      8.221
Health         |EDC-NP|             4     4.0370     3.9189      0.539      8.221

Happiness      EDC                  4     3.7807     3.3506      0.942      8.280
Happiness      NPROG                4     1.0000     0.8165      0.000      2.000
Happiness      EDC-NP               4     2.7807     2.6461      0.536      6.280
Happiness      |EDC-NP|             4     2.7807     2.6461      0.536      6.280

Utopia         EDC                  4     1.4252     1.6683      0.198      3.890
Utopia         NPROG                4     1.1250     0.6292      0.500      2.000
Utopia         EDC-NP               4     0.3002     1.0613     -0.302      1.890
Utopia         |EDC-NP|             4     0.6449     0.8318      0.191      1.890

Summary of descriptive means (if NP > 0)
----------------------------------------

EDC_trait      Variable             n      Mean     Std_Dev       Min        Max 

Health         EDC                  5     4.2296     4.4032      0.000     10.221
Health         NPROG                5     1.2000     0.4472      1.000      2.000
Health         EDC-NP               5     3.0296     4.0734     -1.000      8.221
Health         |EDC-NP|             5     3.4296     3.6556      0.539      8.221
Health         EDC/NP               5     3.2075     3.0501      0.000      7.531

Happiness      EDC                  3     4.7268     3.3866      1.536      8.280
Happiness      NPROG                3     1.3333     0.5774      1.000      2.000
Happiness      EDC-NP               3     3.3935     2.8722      0.536      6.280
Happiness      |EDC-NP|             3     3.3935     2.8722      0.536      6.280
Happiness      EDC/NP               3     3.3469     1.5727      1.536      4.365

Utopia         EDC                  5     1.1402     1.5791      0.000      3.890
Utopia         NPROG                5     1.0000     0.6124      0.500      2.000
Utopia         EDC-NP               5     0.1402     0.9863     -0.500      1.890
Utopia         |EDC-NP|             5     0.6159     0.7233      0.191      1.890
Utopia         EDC/NP               5     0.7907     0.7271      0.000      1.945

Summary of descriptive means (if EDC > 0 and NP > 0)
----------------------------------------------------

EDC_trait      Variable             n      Mean     Std_Dev       Min        Max 

Health         EDC                  4     5.2870     4.2892      1.539     10.221
Health         NPROG                4     1.2500     0.5000      1.000      2.000
Health         EDC-NP               4     4.0370     3.9189      0.539      8.221
Health         |EDC-NP|             4     4.0370     3.9189      0.539      8.221
Health         EDC/NP               4     4.0094     2.8491      1.539      7.531

Happiness      EDC                  3     4.7268     3.3866      1.536      8.280
Happiness      NPROG                3     1.3333     0.5774      1.000      2.000
Happiness      EDC-NP               3     3.3935     2.8722      0.536      6.280
Happiness      |EDC-NP|             3     3.3935     2.8722      0.536      6.280
Happiness      EDC/NP               3     3.3469     1.5727      1.536      4.365

Utopia         EDC                  4     1.4252     1.6683      0.198      3.890
Utopia         NPROG                4     1.1250     0.6292      0.500      2.000
Utopia         EDC-NP               4     0.3002     1.0613     -0.302      1.890
Utopia         |EDC-NP|             4     0.6449     0.8318      0.191      1.890
Utopia         EDC/NP               4     0.9884     0.6666      0.395      1.945

Total RAM used : RSS = 1032  VSZ = 7824 Kb
Total time (hh:mm:ss): 00:00:01
